Keeping your coop maintained is an ongoing venture. Whether you use the deep litter method or some other method of cleaning it you still need to have a plan for cleaning, disinfecting, & treating for external parasites. Here is a good link about cleaning & disinfecting, it may be intended somewhat for bigger operations but there is still some good information there: http://www.fao.org/docrep/014/al876e/al87600.pdf
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